Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 8 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2659: cysteine desulfurase NifS (RefSeq)
is similar to:

SPSS_METJA / Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC from Methanocaldococcus jannaschii
pscS / Q59072: Sep-tRNA:Cys-tRNA synthase monomer (EC from Methanocaldococcus jannaschii
Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC from Methanocaldococcus jannaschii

23% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory