Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 26 curated entries in PaperBLAST's database that match '2.6.1.13' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_3149: acetylornithine aminotransferase (RefSeq)
is similar to:
PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

43% id,
91% cov

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

33% id,
95% cov

OAT_RAT / P04182: Ornithine aminotransferase, mitochondrial; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Rattus norvegicus
P04182: ornithine aminotransferase (EC 2.6.1.13) from Rattus norvegicus

35% id,
91% cov

More...

DvMF_0516: aminotransferase class-III (RefSeq)
is similar to:
PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

28% id,
99% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

28% id,
99% cov

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis

31% id,
88% cov

More...

DvMF_1002: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq)
is similar to:
PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

28% id,
95% cov

OAT_EMENI / Q92413: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Emericella nidulans
otaA: ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans

29% id,
90% cov

Q2Z0F8: ornithine aminotransferase (EC 2.6.1.13) from Agaricus bisporus

27% id,
93% cov

More...

DvMF_2502: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:
PaperBLAST

OAT_YEAST / P07991: Ornithine aminotransferase; OTAse; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

28% id,
86% cov

OAT_EMENI / Q92413: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Emericella nidulans
otaA: ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans

27% id,
85% cov

OAT_SCHPO / Q9P7L5: Ornithine aminotransferase car2; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Schizosaccharomyces pombe
car2 / RF|NP_596588.1: ornithine transaminase Car2; EC 2.6.1.13 from Schizosaccharomyces pombe

28% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

609105-610511 (frame +3) on 254340
is similar to:
PaperBLAST

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis
Also see hits to annotated proteins above

31% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory