Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 16 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1410: Shikimate kinase (RefSeq)
is similar to:

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC from Gluconobacter oxydans

31% id,
82% cov

DvMF_0971: shikimate kinase (RefSeq)
is similar to:

IDNK / Q5T6J7: gluconokinase monomer (EC from Homo sapiens
Q5T6J7: gluconokinase (EC from Homo sapiens

43% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory