Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.13'.

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0926: tetraacyldisaccharide 4'-kinase (RefSeq)
is similar to:
PaperBLAST

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana

28% id,
82% cov

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC 2.7.1.130 from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli

40% id,
56% cov

O67572: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Aquifex aeolicus

35% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1122605-1123774 (frame -3) on 254340
is similar to:
PaperBLAST

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana
Also see hits to annotated proteins above

28% id,
84% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory