Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0809: glycerol kinase (RefSeq)
is similar to:
PaperBLAST

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

26% id,
97% cov

DvMF_1338: metal dependent phosphohydrolase (RefSeq)
is similar to:
PaperBLAST

mtlY / Q4KC52: xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

31% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory