Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 78 curated entries in PaperBLAST's database that match '2.7.2.1'.

These curated entries have 52 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2756: phosphoribosylglycinamide formyltransferase 2 (RefSeq)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

63% id,
100% cov

DvMF_1865: acetate kinase (RefSeq)
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

54% id,
99% cov

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

53% id,
100% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

53% id,
97% cov

More...

DvMF_1377: gamma-glutamyl kinase (RefSeq)
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

41% id,
99% cov

Ga0059261_3512: glutamate 5-kinase (EC 2.7.2.11) from Sphingomonas koreensis

37% id,
98% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

38% id,
96% cov

More...

DvMF_2626: butyrate kinase (RefSeq)
is similar to:
PaperBLAST

buk1 / Q45829: butyrate kinase monomer (EC 2.7.2.14) from Clostridium acetobutylicum

36% id,
93% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylotuvimicrobium alcaliphilum

36% id,
30% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

28% id,
31% cov

More...

DvMF_0306: acetylglutamate kinase (RefSeq)
is similar to:
PaperBLAST

LYSZ_SULAC / Q4JAQ2: [LysW]-aminoadipate/[LysW]-glutamate kinase; EC 2.7.2.17; EC 2.7.2.19 from Sulfolobus acidocaldarius
lysZ / Q4JAQ2: [LysW}-glutamate/[LysW]-aminoadipate kinase (EC 2.7.2.17; EC 2.7.2.19) from Sulfolobus acidocaldarius
Q4JAQ2: [amino group carrier protein]-L-2-aminoadipate 6-kinase (EC 2.7.2.17) from Sulfolobus acidocaldarius

31% id,
95% cov

lysZ / Q5SH27: [LysW]-L-2-aminoadipate 6-kinase monomer (EC 2.7.2.17) from Thermus thermophilus

30% id,
95% cov

LYSZ_THET2 / O50147: [LysW]-aminoadipate kinase; EC 2.7.2.17 from Thermus thermophilus

30% id,
95% cov

DvMF_0600: degV family protein (RefSeq)
is similar to:
PaperBLAST

fakB2 / Q2FYK7: fatty acid kinase FakB2 (EC 2.7.2.18) from Staphylococcus aureus

25% id,
99% cov

fakA / Q2FZ58: fatty acid kinase FakA (EC 2.7.2.18) from Staphylococcus aureus

33% id,
58% cov

DvMF_0612: gamma-glutamyl phosphate reductase (RefSeq)
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

38% id,
56% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

36% id,
58% cov

P5CS_HUMAN / P54886: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Homo sapiens
ALDH18A1 / P54886: δ-1-pyrroline-5-carboxylate synthase (EC 1.2.1.41; EC 2.7.2.11) from Homo sapiens

38% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory