Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 28 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2756: phosphoribosylglycinamide formyltransferase 2 (RefSeq)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

63% id,
100% cov

DvMF_1865: acetate kinase (RefSeq)
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

54% id,
99% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

53% id,
97% cov

P0CW04: acetate kinase (EC 2.7.2.1) from Methanosarcina mazei

53% id,
97% cov

More...

DvMF_2626: butyrate kinase (RefSeq)
is similar to:
PaperBLAST

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum

36% id,
30% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

28% id,
31% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

25% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory