Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 138 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 107 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0188: fructose 1,6-bisphosphatase II (RefSeq)
is similar to:
PaperBLAST

Q8DJE9: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Thermosynechococcus vestitus

39% id,
97% cov

FBSB_SYNE7 / Q31QY2: D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase; FBPase class 2/SBPase; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 2; Fructose-1,6-bisphosphatase F-I; EC 3.1.3.11; EC 3.1.3.37 from Synechococcus elongatus
Q31QY2: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Synechococcus elongatus

39% id,
99% cov

B1XLK5: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Synechococcus sp.

37% id,
99% cov

More...

DvMF_0404: fructose-1,6-bisphosphatase (RefSeq)
is similar to:
PaperBLAST

P46283: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Arabidopsis thaliana

30% id,
70% cov

A8IRK4: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

30% id,
71% cov

P46284: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

30% id,
69% cov

More...

DvMF_1696: Phosphoglycerate mutase (RefSeq)
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

28% id,
71% cov

DvMF_1462: phosphoglycerate mutase 1 family (RefSeq)
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

27% id,
68% cov

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

32% id,
53% cov

SHB17_YEAST / P36136: Sedoheptulose 1,7-bisphosphatase; EC 3.1.3.37 from Saccharomyces cerevisiae

28% id,
37% cov

DvMF_2410: protein serine/threonine phosphatase (RefSeq)
is similar to:
PaperBLAST

RSBU_BACSU / P40399: Phosphoserine phosphatase RsbU; Sigma factor SigB regulation protein RsbU; EC 3.1.3.3 from Bacillus subtilis
P40399: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

24% id,
73% cov

DvMF_1902: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

32% id,
44% cov

DvMF_0209: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
47% cov

DvMF_0254: response regulator receiver modulated serine phosphatase (RefSeq)
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

29% id,
33% cov

DvMF_3065: HAD family hydrolase (RefSeq)
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

25% id,
36% cov

DvMF_3114: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PI5PA_RAT / Q9JMC1: Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A; Inositol polyphosphate 5-phosphatase J; Phosphatidylinositol 1,3,4,5-tetrakisphosphate 5-phosphatase; Phosphatidylinositol 1,4,5-trisphosphate 5-phosphatase; Proline-rich inositol polyphosphate 5-phosphatase; EC 3.1.3.36; EC 3.1.3.56 from Rattus norvegicus

31% id,
22% cov

SYNJ1_MOUSE / Q8CHC4: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Mus musculus

28% id,
15% cov

SYNJ1_RAT / Q62910: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Rattus norvegicus

26% id,
14% cov

DvMF_2823: penicillin-binding protein 2 (RefSeq)
is similar to:
PaperBLAST

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens

29% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

474716-475936 (frame -3) on 254340
is similar to:
PaperBLAST

A8IRK4: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

28% id,
80% cov

1792147-1793001 (frame +1) on 254340
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana
Also see hits to annotated proteins above

26% id,
76% cov

3395282-3395644 (frame -3) on 254340
is similar to:
PaperBLAST

SYNJ1_BOVIN / O18964: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; p150; EC 3.1.3.36 from Bos taurus

35% id,
8% cov

2367033-2367416 (frame +3) on 254340
is similar to:
PaperBLAST

SYNJ1_BOVIN / O18964: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; p150; EC 3.1.3.36 from Bos taurus

41% id,
6% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory