Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 17 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1019: peptidase dimerisation domain protein (RefSeq)
is similar to:
PaperBLAST

DAPE_MYCS2 / A0R2G4: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Mycolicibacterium smegmatis

30% id,
79% cov

Q59284: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Corynebacterium glutamicum

29% id,
79% cov

P9WHS9: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Mycobacterium tuberculosis

31% id,
53% cov

DvMF_0550: diaminopimelate aminotransferase (RefSeq)
is similar to:
PaperBLAST

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

24% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory