Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0653: N-carbamoylputrescine amidase (RefSeq)
is similar to:
PaperBLAST

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

31% id,
92% cov

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

31% id,
92% cov

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

31% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory