Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0654: Amidohydrolase 3 (RefSeq)
is similar to:
PaperBLAST

PGA1_c36350: Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens

29% id,
43% cov

HUTI_AGRFC / Q8U8Z6: Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum
Q8U8Z6: imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens

31% id,
29% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

44% id,
15% cov

More...

DvMF_0548: Guanine deaminase (RefSeq)
is similar to:
PaperBLAST

PGA1_c36350: Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens

28% id,
16% cov

RR42_RS16905: Imidazolonepropionase (EC 3.5.2.7) from Cupriavidus basilensis

36% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory