Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1964: phosphoribosyl-AMP cyclohydrolase (RefSeq)
is similar to:

HIS3_METTH / O26347: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC from Methanothermobacter thermautotrophicus

55% id,
86% cov

HSERO_RS20310: phosphoribosyl-AMP cyclohydrolase (EC from Herbaspirillum seropedicae

53% id,
59% cov

HIS3_METVA / Q50837: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC from Methanococcus vannielii
Q50837: phosphoribosyl-AMP cyclohydrolase (EC from Methanococcus vannielii

48% id,
59% cov


DvMF_2814: histidinol dehydrogenase (RefSeq)
is similar to:

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC; EC; EC from Saccharomyces cerevisiae

36% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory