Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 43 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0353: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

25% id,
82% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

27% id,
54% cov

DvMF_1532: carboxynorspermidine decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

25% id,
57% cov

DvMF_1010: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

40% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory