Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 12 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1743: Indole-3-glycerol-phosphate synthase (RefSeq)
is similar to:
PaperBLAST

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

39% id,
100% cov

trpC / Q9YGB5: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis
Q9YGB5: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis

36% id,
93% cov

A1KJ27: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
A5U2W7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
P9WFX7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis

36% id,
92% cov

More...

DvMF_1742: Phosphoribosylanthranilate isomerase (RefSeq)
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli

38% id,
43% cov

DvMF_1745: glutamine amidotransferase of anthranilate synthase (RefSeq)
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

41% id,
39% cov

DvMF_2316: glutamine amidotransferase class-I (RefSeq)
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

32% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2132408-2133145 (frame -3) on 254340
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

40% id,
41% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory