Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 105 curated entries in PaperBLAST's database that match '4.1.2.13' as complete word(s).

These curated entries have 81 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1751: fructose-bisphosphate aldolase (RefSeq)
is similar to:
PaperBLAST

aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii

59% id,
95% cov

fba / P58314: fructose-1,6-bisphosphate aldolase subunit (EC 4.1.2.13) from Pyrococcus furiosus

36% id,
98% cov

ALF1_HALS3 / B0R3Y0: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; EC 4.1.2.13 from Halobacterium salinarum

33% id,
96% cov

More...

DvMF_0013: fructose-1,6-bisphosphate aldolase, class II (RefSeq)
is similar to:
PaperBLAST

O97447: fructose-bisphosphate aldolase (EC 4.1.2.13) from Giardia intestinalis

53% id,
93% cov

Q9RHA2: fructose-bisphosphate aldolase (EC 4.1.2.13) from Thermus aquaticus

49% id,
97% cov

ALF_THECA / Q703I2: Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Thermus caldophilus

48% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory