Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 4 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0562: dihydrodipicolinate synthase (RefSeq)
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

32% id,
98% cov

DvMF_1898: HpcH/HpaI aldolase (RefSeq)
is similar to:
PaperBLAST

GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli
YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli
garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli

34% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory