Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_3097: serine hydroxymethyltransferase (RefSeq)
is similar to:

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC; EC from Hydrogenobacter thermophilus

61% id,
96% cov

P0A825: low-specificity L-threonine aldolase (EC from Escherichia coli

60% id,
97% cov

DvMF_0572: Threonine aldolase (RefSeq)
is similar to:

O50584: low-specificity L-threonine aldolase (EC from Pseudomonas sp.

43% id,
98% cov

A0T1V9: low-specificity L-threonine aldolase (EC from Sinorhizobium arboris

41% id,
99% cov

ltaA / O07051: L-allo-threonine aldolase subunit (EC from Aeromonas jandaei

26% id,
89% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory