Searching in Desulfovibrio vulgaris Miyazaki F (Miya)
Found 53 curated entries in PaperBLAST's database that match '4.2.1.12'.
These curated entries have 33 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query
| DvMF_2237: tryptophan synthase subunit beta (RefSeq) is similar to: | PaperBLAST |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 62% id, 99% cov |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 59% id, 97% cov |
TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli | 56% id, 97% cov |
| DvMF_1741: tryptophan synthase subunit beta (RefSeq) is similar to: | PaperBLAST |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 61% id, 97% cov |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 58% id, 99% cov |
TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli | 58% id, 98% cov |
| DvMF_2034: dihydroxy-acid dehydratase (RefSeq) is similar to: | PaperBLAST |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 33% id, 89% cov |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 35% id, 82% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 31% id, 88% cov |
| DvMF_1706: glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq) is similar to: | PaperBLAST |
G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia | 28% id, 49% cov |
| DvMF_0582: phosphoheptose isomerase (RefSeq) is similar to: | PaperBLAST |
G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia | 24% id, 58% cov |
| DvMF_1740: tryptophan synthase subunit alpha (RefSeq) is similar to: | PaperBLAST |
A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis | 37% id, 34% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2520275-2522272 (frame +2) on 254340 is similar to: | PaperBLAST |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 32% id, 92% cov |
Lawrence Berkeley National Laboratory