Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 19 curated entries in PaperBLAST's database that match '4.2.1.22'.

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2658: cysteine synthase (RefSeq)
is similar to:
PaperBLAST

A0A1J9VES8: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Bacillus anthracis

42% id,
99% cov

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

37% id,
100% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactobacillus plantarum

37% id,
100% cov

More...

DvMF_2848: CBS domain containing membrane protein (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

41% id,
97% cov

DvMF_1585: CBS domain containing protein (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

38% id,
96% cov

DvMF_3126: inosine-5'-monophosphate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

31% id,
93% cov

DvMF_0278: CBS domain containing membrane protein (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

34% id,
62% cov

DvMF_0413: putative signal transduction protein with CBS domains (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

37% id,
56% cov

DvMF_0967: putative transcriptional regulator, XRE family (RefSeq)
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

36% id,
24% cov

DvMF_0553: CBS domain containing protein (RefSeq)
is similar to:
PaperBLAST

Q3TWN3: cystathionine beta-synthase (EC 4.2.1.22) from Mus musculus

33% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3953881-3955044 (frame -1) on 254340
is similar to:
PaperBLAST

Q3TWN3: cystathionine beta-synthase (EC 4.2.1.22) from Mus musculus
Also see hits to annotated proteins above

24% id,
33% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory