Searching in Desulfovibrio vulgaris Miyazaki F (Miya)
Found 3 curated entries in PaperBLAST's database that match '4.2.1.34' as complete word(s).
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query
DvMF_2461: fumarate hydratase (RefSeq) is similar to: | PaperBLAST |
Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans | 40% id, 55% cov |
P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 33% id, 45% cov |
P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 32% id, 45% cov |
DvMF_2462: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit (RefSeq) is similar to: | PaperBLAST |
Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans | 44% id, 32% cov |
P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 41% id, 32% cov |
P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 40% id, 32% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3104300-3105427 (frame +2) on 254340 is similar to: | PaperBLAST |
Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans | 39% id, 56% cov |
Lawrence Berkeley National Laboratory