Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0562: dihydrodipicolinate synthase (RefSeq)
is similar to:

A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC from Polaromonas naphthalenivorans

30% id,
96% cov

KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC from Acinetobacter baylyi

29% id,
96% cov

B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC from Comamonas testosteroni

29% id,
96% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory