Searching in Desulfovibrio vulgaris Miyazaki F (Miya)
Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query
| DvMF_2006: D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq) is similar to: | PaperBLAST |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 32% id, 13% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 32% id, 13% cov |
| DvMF_2004: D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq) is similar to: | PaperBLAST |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 32% id, 13% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 32% id, 13% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2486949-2487341 (frame -2) on 254340 is similar to: | PaperBLAST |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 30% id, 16% cov |
Lawrence Berkeley National Laboratory