Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1749: prephenate dehydratase (RefSeq)
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

42% id,
98% cov

PHEA_METJA / Q58054: Prephenate dehydratase; PDT; MjPDT; EC 4.2.1.51 from Methanocaldococcus jannaschii

34% id,
99% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

33% id,
98% cov

More...

DvMF_1344: extracellular solute-binding protein family 3 (RefSeq)
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

27% id,
96% cov

DvMF_2685: extracellular solute-binding protein family 3 (RefSeq)
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

28% id,
91% cov

DvMF_1918: extracellular solute-binding protein family 3 (RefSeq)
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

25% id,
71% cov

DvMF_2787: extracellular solute-binding protein family 3 (RefSeq)
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

25% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory