Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 4 curated entries in PaperBLAST's database that match '4.2.1.7' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2003: Altronate dehydratase (RefSeq)
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

29% id,
77% cov

DvMF_2005: Altronate dehydratase (RefSeq)
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

29% id,
77% cov

DvMF_2006: D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq)
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

32% id,
17% cov

DvMF_2004: D-galactarate dehydratase/altronate hydrolase-like protein (RefSeq)
is similar to:
PaperBLAST

UXAA_ECOLI / P42604: Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli
YgjW / b3091: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli
uxaA / P42604: D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli

32% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory