Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 52 curated entries in PaperBLAST's database that match '4.3.2.1'.

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2305: imidazole glycerol phosphate synthase subunit HisH (RefSeq)
is similar to:
PaperBLAST

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

100% id,
100% cov

DVU0285: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

89% id,
100% cov

HSERO_RS20325: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Herbaspirillum seropedicae

40% id,
96% cov

More...

DvMF_2304: imidazole glycerol phosphate synthase subunit HisF (RefSeq)
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus
Q7SIB9: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Thermus thermophilus

52% id,
99% cov

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

49% id,
100% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

48% id,
99% cov

More...

DvMF_0048: argininosuccinate lyase (RefSeq)
is similar to:
PaperBLAST

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

48% id,
100% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus

47% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

47% id,
98% cov

More...

DvMF_3120: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq)
is similar to:
PaperBLAST

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

29% id,
82% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

28% id,
81% cov

Q5NMD6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Zymomonas mobilis

27% id,
84% cov

More...

DvMF_2143: dihydroorotate dehydrogenase family protein (RefSeq)
is similar to:
PaperBLAST

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

27% id,
42% cov

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

30% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3944304-3946145 (frame -2) on 254340
is similar to:
PaperBLAST

Q5NMD4: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Zymomonas mobilis
Also see hits to annotated proteins above

27% id,
77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory