Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 8 curated entries in PaperBLAST's database that match '5.1.1.5'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1349: alanine racemase (RefSeq)
is similar to:
PaperBLAST

alr / Q88GJ9: amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida

30% id,
90% cov

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

27% id,
87% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

27% id,
88% cov

DvMF_1717: N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

38% id,
50% cov

DvMF_2382: aspartate-semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

27% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1647551-1648840 (frame +2) on 254340
is similar to:
PaperBLAST

alr / Q88GJ9: amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida
Also see hits to annotated proteins above

29% id,
94% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis
Also see hits to annotated proteins above

26% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory