Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.7'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0561: diaminopimelate epimerase (RefSeq)
is similar to:
PaperBLAST

DAPF_THEMA / Q9X1L0: Diaminopimelate epimerase; DAP epimerase; Dpm epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Thermotoga maritima

31% id,
96% cov

E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae

31% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

660391-661353 (frame +1) on 254340
is similar to:
PaperBLAST

E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae
Also see hits to annotated proteins above

31% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory