Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 90 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0348: Triose-phosphate isomerase (RefSeq)
is similar to:

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Thermus thermophilus

45% id,
98% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Deinococcus radiodurans

46% id,
95% cov

TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC from Drosophila melanogaster

44% id,
98% cov


DvMF_0975: phosphoglycerate kinase (RefSeq)
is similar to:

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC; EC from Thermotoga maritima
pgk / P36204: Pgk (EC; EC from Thermotoga maritima
P36204: triose-phosphate isomerase (EC from Thermotoga maritima

46% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory