Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 3 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1468: adenylosuccinate lyase (RefSeq)
is similar to:

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC from Cupriavidus basilensis

28% id,
92% cov

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC from Agrobacterium tumefaciens

25% id,
95% cov

pcaB2 / Q2HNY9: 3-carboxymuconate lactonizing enzyme type 2 (EC from Hydrogenophaga intermedia

30% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory