Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1590: glutamine synthetase catalytic region (RefSeq)
is similar to:
PaperBLAST

glnN / Q31RW8: glutamine synthetase type III subunit (EC 6.3.1.2) from Synechococcus elongatus

59% id,
100% cov

gluN / Q4ZH57: glutamine synthetase subunit (EC 6.3.1.2) from Ruminococcus albus

53% id,
99% cov

Q5LGP1: glutamine synthetase (EC 6.3.1.2) from Bacteroides fragilis

43% id,
100% cov

More...

DvMF_2099: glutamine synthetase, type I (RefSeq)
is similar to:
PaperBLAST

GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei
Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei

54% id,
99% cov

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

53% id,
99% cov

GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii
Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii

51% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory