Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 3 curated entries in PaperBLAST's database that match 'ATP-dependent reduction of co(II)balamin' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1398: iron-sulfur cluster-binding protein, putative (RefSeq)
is similar to:
PaperBLAST

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

100% id,
100% cov

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

51% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory