Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 3 curated entries in PaperBLAST's database that match 'anthranilate synthase component II' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1745: glutamine amidotransferase of anthranilate synthase (RefSeq)
is similar to:
PaperBLAST

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

46% id,
100% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

47% id,
95% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

40% id,
97% cov

DvMF_2370: carbamoyl phosphate synthase small subunit (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

34% id,
87% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

30% id,
87% cov

DvMF_2316: glutamine amidotransferase class-I (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

33% id,
74% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

31% id,
77% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

33% id,
72% cov

DvMF_0015: peptidase C26 (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

35% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory