Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 2 curated entries in PaperBLAST's database that match 'citramalate isomerase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0275: putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq)
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

81% id,
100% cov

DvMF_1793: 3-isopropylmalate dehydratase, small subunit (RefSeq)
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

51% id,
95% cov

DvMF_3021: aconitate hydratase (RefSeq)
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

32% id,
91% cov

DvMF_1791: 2-isopropylmalate synthase (RefSeq)
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

27% id,
99% cov

DvMF_2612: pyruvate carboxyltransferase (RefSeq)
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

26% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory