Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1099: drug resistance transporter, EmrB/QacA subfamily (RefSeq)
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

25% id,
87% cov

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

29% id,
33% cov

DvMF_2807: major facilitator superfamily MFS_1 (RefSeq)
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

32% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory