Curated BLAST for Genomes


Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 59 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_3198: 3-isopropylmalate dehydrogenase
is similar to:

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC from Acidithiobacillus ferrooxidans

64% id,
98% cov

Q00412: 3-isopropylmalate dehydrogenase (EC from Arthrospira platensis

61% id,
98% cov

P96197: 3-isopropylmalate dehydrogenase (EC from Azotobacter vinelandii

60% id,
98% cov


Dsui_3296: isocitrate dehydrogenase, NADP-dependent, prokaryotic type
is similar to:

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC; EC 1.1.1.n5; EC from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC from Methanocaldococcus jannaschii

33% id,
97% cov

LEU3_HALVD / D4GYE8: 3-isopropylmalate dehydrogenase; EC from Haloferax volcanii

31% id,
96% cov

Q72IW9: isocitrate-homoisocitrate dehydrogenase (EC; 3-isopropylmalate dehydrogenase (EC from Thermus thermophilus

34% id,
79% cov


Dsui_1354: transcriptional regulator with HTH domain and aminotransferase domain
is similar to:

P87267: 3-isopropylmalate dehydrogenase (EC from Saccharomyces cerevisiae

37% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory