Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 10 curated entries in PaperBLAST's database that match '1.2.1.71' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_0105: NAD-dependent aldehyde dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_1974: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Pseudomonas fluorescens

35% id,
98% cov

ASTD_PSEAE / O50174: N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Pseudomonas aeruginosa
astD: succinylglutamate-semialdehyde dehydrogenase; EC 1.2.1.71 from Pseudomonas aeruginosa

34% id,
98% cov

Sama_3009: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Shewanella amazonensis

33% id,
98% cov

More...

Dsui_0437: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

ASTD_PSEAE / O50174: N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Pseudomonas aeruginosa
astD: succinylglutamate-semialdehyde dehydrogenase; EC 1.2.1.71 from Pseudomonas aeruginosa

35% id,
94% cov

PfGW456L13_1974: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Pseudomonas fluorescens

35% id,
94% cov

ASTD_SALTY / Q8ZPV0: N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Salmonella typhimurium

34% id,
93% cov

More...

Dsui_1464: NAD-dependent aldehyde dehydrogenase
is similar to:
PaperBLAST

Sama_3009: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Shewanella amazonensis

31% id,
94% cov

SO0619: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Shewanella oneidensis

30% id,
94% cov

ASTD_PSEAE / O50174: N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Pseudomonas aeruginosa
astD: succinylglutamate-semialdehyde dehydrogenase; EC 1.2.1.71 from Pseudomonas aeruginosa

30% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory