Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_1560: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:
PaperBLAST

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC 2.4.2.4 from Lactobacillus rhamnosus

62% id,
91% cov

Dsui_2698: purine nucleoside phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

53% id,
99% cov

Dsui_3446: 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase
is similar to:
PaperBLAST

DPPRS_MYCS2 / A0R626: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Mycolicibacterium smegmatis

36% id,
93% cov

DPPRS_MYCTU / P9WFR5: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Mycobacterium tuberculosis
ubiA / P9WFR5: DPPR synthase (EC 2.4.2.45) from Mycobacterium tuberculosis
P9WFR5: decaprenyl-phosphate phosphoribosyltransferase (EC 2.4.2.45) from Mycobacterium tuberculosis

36% id,
92% cov

DPPRS_CORGL / Q8NLQ9: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Corynebacterium glutamicum

34% id,
86% cov

Dsui_3323: tRNA-guanine transglycosylase, queuosine-34-forming
is similar to:
PaperBLAST

ATGT_HALVD / Q9C4M3: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Haloferax volcanii
Q9C4M3: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Haloferax volcanii

28% id,
66% cov

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

26% id,
66% cov

ATGT_METJA / Q57878: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Methanocaldococcus jannaschii
tgtA / Q57878: 7-cyano-7-deazaguanine tRNA-ribosyltransferase monomer (EC 2.4.2.48) from Methanocaldococcus jannaschii
Q57878: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanocaldococcus jannaschii

27% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1641093-1641416 (frame -3) on CP003153
is similar to:
PaperBLAST

GXLT2_HUMAN / A0PJZ3: Glucoside xylosyltransferase 2; Glycosyltransferase 8 domain-containing protein 4; EC 2.4.2.42 from Homo sapiens

39% id,
16% cov

3120894-3121220 (frame -3) on CP003153
is similar to:
PaperBLAST

GXLT2_HUMAN / A0PJZ3: Glucoside xylosyltransferase 2; Glycosyltransferase 8 domain-containing protein 4; EC 2.4.2.42 from Homo sapiens

36% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory