Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 19 curated entries in PaperBLAST's database that match '3.1.2.4'.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_1378: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

58% id,
100% cov

HIBCH_RAT / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Rattus norvegicus
Hibch / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Rattus norvegicus

32% id,
68% cov

HIBCH_HUMAN / Q6NVY1: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Homo sapiens

30% id,
68% cov

More...

Dsui_0521: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

34% id,
99% cov

Dsui_2913: dihydroxynaphthoate synthase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

30% id,
98% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

30% id,
60% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

28% id,
63% cov

More...

Dsui_2041: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

29% id,
100% cov

HIBC1_ARATH / Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana
Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Arabidopsis thaliana

32% id,
60% cov

bch / Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus
Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus

34% id,
41% cov

Dsui_0981: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

29% id,
98% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

29% id,
77% cov

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

26% id,
73% cov

More...

Dsui_0323: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

34% id,
77% cov

Dsui_0502: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

30% id,
78% cov

C3KM96: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Sinorhizobium fredii

29% id,
75% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

34% id,
54% cov

More...

Dsui_2807: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

HIBC1_ARATH / Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana
Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Arabidopsis thaliana

26% id,
63% cov

Dsui_0318: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

26% id,
52% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

27% id,
39% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

22% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory