Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 529 curated entries in PaperBLAST's database that match '3.2.1.21' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_0196: hypothetical protein
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

25% id,
58% cov

Dsui_1854: hypothetical protein
is similar to:
PaperBLAST

bglD: probable beta-glucosidase D; EC 3.2.1.21 from Emericella nidulans

42% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1407598-1408671 (frame +1) on CP003153
is similar to:
PaperBLAST

AAA23091.1: β-glucosidase (EC 3.2.1.21)

28% id,
34% cov

1750215-1752704 (frame -3) on CP003153
is similar to:
PaperBLAST

AAA23091.1: β-glucosidase (EC 3.2.1.21)

32% id,
25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory