Curated BLAST for Genomes


Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 36 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_0087: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
is similar to:

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC; EC from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC; EC from Pseudomonas aeruginosa

48% id,
97% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC; EC from Pseudomonas fluorescens

48% id,
96% cov

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC; EC from Pyrococcus horikoshii
O58649: mannose-1-phosphate guanylyltransferase (EC; glucose-1-phosphate guanylyltransferase (EC; aldose-1-phosphate nucleotidyltransferase (EC; mannose-6-phosphate isomerase (EC from Pyrococcus horikoshii

38% id,
100% cov

Dsui_3057: phosphoglucosamine mutase
is similar to:

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC; EC; EC; EC from Sulfurisphaera tokodaii

27% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory