Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 3 curated entries in PaperBLAST's database that match '2-deoxy-D-ribonate 3-dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_2312: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

34% id,
94% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

33% id,
94% cov

Dsui_3259: dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

33% id,
93% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

31% id,
93% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

29% id,
91% cov

Dsui_0676: short-chain dehydrogenase of unknown substrate specificity
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

31% id,
69% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

31% id,
70% cov

Dsui_0680: short-chain dehydrogenase of unknown substrate specificity
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

31% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2467594-2468580 (frame +1) on CP003153
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae
Also see hits to annotated proteins above

34% id,
97% cov

3243032-3243808 (frame +2) on CP003153
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila
Also see hits to annotated proteins above

27% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory