Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechlorosoma suillum PS (PS)

Found 2 curated entries in PaperBLAST's database that match 'glycine decarboxylase H' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dechlorosoma suillum PS, or try another query

Dsui_2736: glycine cleavage system H protein
is similar to:
PaperBLAST

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

41% id,
81% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2890613-2891047 (frame +2) on CP003153
is similar to:
PaperBLAST

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory