Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 50 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3727: shikimate 5-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

57% id,
99% cov

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

55% id,
99% cov

A0A1K3RIC7: shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis

53% id,
99% cov

More...

Shew_2913: glutamyl-tRNA reductase (RefSeq)
is similar to:
PaperBLAST

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

24% id,
47% cov

Shew_1952: 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

39% id,
27% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

43% id,
2% cov

Shew_0214: 3-dehydroquinate synthase (RefSeq)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

39% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

36% id,
22% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

37% id,
4% cov

Shew_3251: UBA/THIF-type NAD/FAD binding protein (RefSeq)
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida

41% id,
17% cov

Shew_3112: flavocytochrome c (RefSeq)
is similar to:
PaperBLAST

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana

26% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory