Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 148 curated entries in PaperBLAST's database that match '1.1.1.28'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 31 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0787: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:		 PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

 86% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 61% id,
100% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 61% id,
100% cov

More...

Shew_1540: alcohol dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

 71% id,
100% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

 67% id,
99% cov

ADHH_GADMO / P81600: Alcohol dehydrogenase class-3 chain H; Alcohol dehydrogenase class-III chain H; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

 67% id,
99% cov

More...

Shew_2760: isocitrate dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

 46% id,
98% cov

IDH-V / Q945K7: NAD+-dependent isocitrate dehydrogenase catalytic subunit (EC 1.1.1.286) from Arabidopsis thaliana

 49% id,
88% cov

IDH3A / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (EC 1.1.1.286) from Homo sapiens

 47% id,
90% cov

More...

Shew_3471: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

 39% id,
94% cov

Q5JFV8: isocitrate-homoisocitrate dehydrogenase (EC 1.1.1.286) from Thermococcus kodakarensis

 37% id,
88% cov

HICDH_PYRHO / O59394: Isocitrate/homoisocitrate dehydrogenase; HICDH; Beta-decarboxylating dehydrogenase; EC 1.1.1.286 from Pyrococcus horikoshii

 34% id,
87% cov

More...

Shew_1603: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:		 PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 37% id,
97% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 36% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

 37% id,
88% cov

More...

Shew_1673: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:		 PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 34% id,
98% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 33% id,
98% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

 30% id,
92% cov

More...

Shew_2862: short chain dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 33% id,
97% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 33% id,
97% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 32% id,
97% cov

More...

Shew_0887: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 35% id,
88% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 33% id,
92% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 33% id,
90% cov

More...

Shew_1959: short chain dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 31% id,
96% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 31% id,
96% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

 30% id,
90% cov

More...

Shew_1326: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 30% id,
99% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 30% id,
98% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 30% id,
99% cov

More...

Shew_3196: D-3-phosphoglycerate dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 32% id,
93% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

 27% id,
99% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 31% id,
83% cov

More...

Shew_2863: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

 34% id,
88% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

 31% id,
92% cov

ABA2_ARATH / Q9C826: Xanthoxin dehydrogenase; Protein ABSCISIC ACID DEFICIENT 2; Protein GLUCOSE INSENSITIVE 1; Protein IMPAIRED SUCROSE INDUCTION 4; Protein SALOBRENO 3; Protein SALT RESISTANT 1; Protein SUGAR INSENSITIVE 4; Short-chain alcohol dehydrogenase ABA2; Short-chain dehydrogenase reductase 1; AtSDR1; Xanthoxin oxidase; EC 1.1.1.288 from Arabidopsis thaliana
ABA2 / Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

 31% id,
90% cov

More...

Shew_1322: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 31% id,
94% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 31% id,
94% cov

Shew_3525: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:		 PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 31% id,
95% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 30% id,
96% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 30% id,
97% cov

More...

Shew_3727: shikimate 5-dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

 30% id,
96% cov

YDIB_ECOLI / P0A6D5: Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli
YdiB / b1692: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli
ydiB / RF|NP_416207: quinate/shikimate dehydrogenase; EC 1.1.1.282 from Escherichia coli
ydiB / P0A6D5: quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli

 29% id,
97% cov

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

 29% id,
96% cov

More...

Shew_1401: dTDP-glucose 4,6 dehydratase (RefSeq)
is similar to:		 PaperBLAST

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

 28% id,
99% cov

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

 26% id,
82% cov

Shew_3048: alcohol dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

ADHX_MYXGL / P80360: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Myxine glutinosa

 28% id,
97% cov

U6C832: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Paecilomyces variotii

 27% id,
98% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

 27% id,
94% cov

More...

Shew_1407: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 27% id,
97% cov

Shew_2309: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 28% id,
93% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

 29% id,
89% cov

Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii

 24% id,
98% cov

More...

Shew_3710: L-threonine 3-dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae

 27% id,
97% cov

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

 26% id,
98% cov

ADHX_DROME / P46415: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; Octanol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.73; EC 1.1.1.284 from Drosophila melanogaster

 27% id,
92% cov

More...

Shew_1332: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

 28% id,
91% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

 26% id,
86% cov

Shew_3704: dTDP-glucose 4,6-dehydratase (RefSeq)
is similar to:		 PaperBLAST

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

 27% id,
95% cov

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

 25% id,
97% cov

Shew_2557: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 33% id,
76% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 32% id,
76% cov

Shew_2409: short chain dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 26% id,
95% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

 25% id,
77% cov

Shew_3415: short chain dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

 34% id,
65% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 29% id,
71% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

 27% id,
65% cov

Shew_0553: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 26% id,
84% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

 26% id,
80% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

 27% id,
78% cov

More...

Shew_1481: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 28% id,
73% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

 27% id,
73% cov

Shew_0706: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

 24% id,
81% cov

Shew_1550: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 30% id,
60% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 25% id,
57% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 26% id,
46% cov

More...

Shew_3136: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:		 PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 24% id,
58% cov

Shew_3251: UBA/THIF-type NAD/FAD binding protein (RefSeq)
is similar to:		 PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

 41% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 28 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3394353-3395264 (frame +3) on 113993
is similar to:		 PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Also see hits to annotated proteins above

 33% id,
92% cov

ABA2_ARATH / Q9C826: Xanthoxin dehydrogenase; Protein ABSCISIC ACID DEFICIENT 2; Protein GLUCOSE INSENSITIVE 1; Protein IMPAIRED SUCROSE INDUCTION 4; Protein SALOBRENO 3; Protein SALT RESISTANT 1; Protein SUGAR INSENSITIVE 4; Short-chain alcohol dehydrogenase ABA2; Short-chain dehydrogenase reductase 1; AtSDR1; Xanthoxin oxidase; EC 1.1.1.288 from Arabidopsis thaliana
ABA2 / Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Also see hits to annotated proteins above

 31% id,
95% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa
Also see hits to annotated proteins above

 31% id,
95% cov

1538303-1539079 (frame -3) on 113993
is similar to:		 PaperBLAST

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum
Also see hits to annotated proteins above

 32% id,
95% cov

4212029-4212829 (frame +2) on 113993
is similar to:		 PaperBLAST

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans
Also see hits to annotated proteins above

 31% id,
93% cov

4069415-4070257 (frame -3) on 113993
is similar to:		 PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Also see hits to annotated proteins above

 33% id,
71% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory