Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.376' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1716: 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq)
is similar to:
PaperBLAST

ARADH_HALVD / D4GP33: L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii
xacB / D4GP33: L-arabinose 1-dehydrogenase (NADP+) monomer (EC 1.1.1.376) from Haloferax volcanii
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii

30% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory