Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1563: isocitrate dehydrogenase, NADP-dependent (RefSeq) is similar to:	PaperBLAST
Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	73% id, 99% cov
IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii	72% id, 99% cov
idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola	71% id, 100% cov
A0A0E3SSZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methanococcoides methylutens	69% id, 100% cov
B2ZAA4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Streptomyces lividans	64% id, 100% cov
V5VCI0: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Acinetobacter baumannii	62% id, 99% cov
IDH_CORGL / P50216: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Corynebacterium glutamicum P50216: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Corynebacterium glutamicum	62% id, 99% cov
O53611: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	61% id, 99% cov
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Shew_2760: isocitrate dehydrogenase (RefSeq) is similar to:	PaperBLAST
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	37% id, 94% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	38% id, 92% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	38% id, 91% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	48% id, 68% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	36% id, 90% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	34% id, 93% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	35% id, 88% cov
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	35% id, 87% cov
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori	32% id, 93% cov
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii	31% id, 91% cov
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli	35% id, 52% cov
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda	35% id, 52% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	32% id, 54% cov
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	33% id, 50% cov
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa	36% id, 44% cov
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	33% id, 44% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	46% id, 31% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	41% id, 31% cov
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori	35% id, 36% cov
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda	38% id, 32% cov
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Shew_3471: 3-isopropylmalate dehydrogenase (RefSeq) is similar to:	PaperBLAST
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	29% id, 90% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	28% id, 90% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	26% id, 92% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	32% id, 67% cov
icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	28% id, 54% cov
Q4E4L7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	23% id, 62% cov
Q4DG65: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	26% id, 53% cov
IDHC_MOUSE / O88844: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus O88844: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	28% id, 44% cov
IDHC_HUMAN / O75874: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH1 / O75874: cytosolic NADP(+)-dependent isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens O75874: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	28% id, 44% cov
IDHP_SCHPO / O14254: Probable isocitrate dehydrogenase [NADP], mitochondrial; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Schizosaccharomyces pombe	25% id, 50% cov
B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum	25% id, 47% cov
A0A4X1UZU9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Sus scrofa	27% id, 44% cov
IDHC_RAT / P41562: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P41562: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	27% id, 44% cov
IDHC_BOVIN / Q9XSG3: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bos taurus	27% id, 44% cov
O65853: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Nicotiana tabacum	31% id, 38% cov
ICDHP_ARATH / Q8LPJ5: Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial; EC 1.1.1.42 from Arabidopsis thaliana	28% id, 38% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	25% id, 31% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory