Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1166: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Lysinibacillus massiliensis

32% id,
95% cov

Shew_1672: 3-hydroxyisobutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

32% id,
92% cov

Shew_1910: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Lysinibacillus massiliensis

27% id,
91% cov

Shew_0070: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Lysinibacillus massiliensis

26% id,
93% cov

Shew_1609: 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

23% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory