Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 59 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3471: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:

D2YZL2: 3-isopropylmalate dehydrogenase (EC from Shewanella benthica

88% id,
100% cov

Q8E9N3: 3-isopropylmalate dehydrogenase (EC from Shewanella oneidensis

87% id,
99% cov

LEU3_ECOLI / P30125: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC from Escherichia coli
LeuB / b0073: 3-isopropylmalate dehydrogenase (EC from Escherichia coli
leuB / P30125: 3-isopropylmalate dehydrogenase (EC from Escherichia coli
P30125: 3-isopropylmalate dehydrogenase (EC from Escherichia coli

69% id,
99% cov


Shew_2760: isocitrate dehydrogenase (RefSeq)
is similar to:

Q72IW9: isocitrate-homoisocitrate dehydrogenase (EC; 3-isopropylmalate dehydrogenase (EC from Thermus thermophilus

46% id,
98% cov

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC; EC 1.1.1.n5; EC from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC from Methanocaldococcus jannaschii

44% id,
98% cov

LEU3_HALVD / D4GYE8: 3-isopropylmalate dehydrogenase; EC from Haloferax volcanii

43% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory