Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 28 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2155: 4-hydroxyphenylpyruvate dioxygenase (RefSeq)
is similar to:
PaperBLAST

SO1962: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

86% id,
100% cov

LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila

44% id,
99% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

44% id,
98% cov

More...

Shew_2734: 4-carboxymuconolactone decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

38% id,
95% cov

Shew_0818: peptidase U32 (RefSeq)
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

31% id,
63% cov

Shew_2787: peptidase U32 (RefSeq)
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

32% id,
25% cov

Shew_2783: peptidase U32 (RefSeq)
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

33% id,
23% cov

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

36% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory