Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 97 curated entries in PaperBLAST's database that match '1.2.1.3' as complete word(s).

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3574: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Psest_2276: Aldehyde dehydrogenase (EC 1.2.1.3) from Pseudomonas stutzeri

74% id,
100% cov

BWI76_RS21985: acetaldehyde dehydrogenase (EC 1.2.1.3) from Klebsiella michiganensis

70% id,
100% cov

HP15_3144: Aldehyde dehydrogenase (EC 1.2.1.3) from Marinobacter adhaerens

74% id,
95% cov

More...

Shew_1910: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

58% id,
100% cov

A9KN57: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Lachnoclostridium phytofermentans

33% id,
87% cov

BALDH_ANTMA / C7A2A0: Benzaldehyde dehydrogenase, mitochondrial; 2-phenylacetaldehyde dehydrogenase; Acetaldehyde dehydrogenase; EC 1.2.1.28; EC 1.2.1.39; EC 1.2.1.3 from Antirrhinum majus

21% id,
69% cov

More...

Shew_0580: succinylglutamic semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

P76217: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Escherichia coli

58% id,
98% cov

Q8BH00: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

31% id,
96% cov

AL2C4_ARATH / Q56YU0: Aldehyde dehydrogenase family 2 member C4; ALDH1a; Protein REDUCED EPIDERMAL FLUORESCENCE 1; EC 1.2.1.3 from Arabidopsis thaliana

31% id,
96% cov

More...

Shew_3173: succinic semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

P51650: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Rattus norvegicus

54% id,
92% cov

ALDH4_BACSU / O34660: Putative aldehyde dehydrogenase DhaS; EC 1.2.1.3 from Bacillus subtilis

40% id,
95% cov

AL1A1_RAT / P51647: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Rattus norvegicus

38% id,
94% cov

More...

Shew_0967: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ALDH4_BACSU / O34660: Putative aldehyde dehydrogenase DhaS; EC 1.2.1.3 from Bacillus subtilis

44% id,
97% cov

P47738: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

45% id,
92% cov

ALDH2_HUMAN / P05091: Aldehyde dehydrogenase, mitochondrial; ALDH class 2; ALDH-E2; ALDHI; EC 1.2.1.3 from Homo sapiens
ALDH2 / P05091: mitochondrial aldehyde dehydrogenase subunit (EC 1.2.1.3; EC 1.2.1.39) from Homo sapiens
P05091: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Homo sapiens

44% id,
93% cov

More...

Shew_3103: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AL3B2_HUMAN / P48448: Aldehyde dehydrogenase family 3 member B2; Aldehyde dehydrogenase 8; EC 1.2.1.3 from Homo sapiens

40% id,
97% cov

ALDH3_BACSU / P46329: Putative aldehyde dehydrogenase AldX; EC 1.2.1.3 from Bacillus subtilis

39% id,
97% cov

ALDH_PSEOL / P12693: Aldehyde dehydrogenase; EC 1.2.1.3 from Pseudomonas oleovorans
alkH / P12693: aldehyde dehydrogenase (EC 1.2.1.3) from Pseudomonas oleovorans

38% id,
98% cov

More...

Shew_0965: methylmalonate-semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ALDH4_BACSU / O34660: Putative aldehyde dehydrogenase DhaS; EC 1.2.1.3 from Bacillus subtilis

34% id,
94% cov

AL9A1_RAT / Q9JLJ3: 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABADH; Aldehyde dehydrogenase family 9 member A1; Gamma-aminobutyraldehyde dehydrogenase; EC 1.2.1.47; EC 1.2.1.3; EC 1.2.1.19 from Rattus norvegicus

32% id,
96% cov

ASC1_DIDFA / A0A5C1REZ4: Aldehyde dehydrogenase; Ascochitine biosynthesis cluster protein 1; EC 1.2.1.3 from Didymella fabae

32% id,
97% cov

More...

Shew_1668: methylmalonate-semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AL1A1_BOVIN / P48644: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Bos taurus

33% id,
95% cov

AL1A7_MOUSE / O35945: Aldehyde dehydrogenase, cytosolic 1; ALDH class 1; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A7; Aldehyde dehydrogenase phenobarbital-inducible; EC 1.2.1.3 from Mus musculus
O35945: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

33% id,
95% cov

AL1A1_RABIT / Q8MI17: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Oryctolagus cuniculus

33% id,
96% cov

More...

Shew_0615: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AL1A1_BOVIN / P48644: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Bos taurus

31% id,
95% cov

FUS7_GIBF5 / S0ENH1: Putative aldehyde dehydrogenase FUS7; Fusarin biosynthesis protein 7; EC 1.2.1.3 from Gibberella fujikuroi

30% id,
97% cov

AL1A1_SHEEP / P51977: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Ovis aries

31% id,
95% cov

More...

Shew_1540: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

30% id,
95% cov

Shew_3710: L-threonine 3-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

30% id,
96% cov

Shew_2364: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

geoB / H1ZV37: geranial dehydrogenase (EC 1.2.1.3; EC 1.2.1.86) from Castellaniella defragrans

25% id,
91% cov

Q9H2A2: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Homo sapiens

22% id,
88% cov

P51650: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Rattus norvegicus

22% id,
85% cov

Shew_1166: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

33% id,
45% cov

Shew_3274: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

32% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory